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FAIR Ontology Metadata - Crucial Information for Understanding, Evaluation, and Application
FAIR Ontology Metadata - Crucial Information for Understanding, Evaluation, and Application
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This presentation was part of the 2nd Ontologies4Chem Workshop held online 11.-12.10.2023.
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URL: https://doi.org/10.5281/zenodo.10117899Communities:Target Groups:
  • Data Steward
Proficiency Levels:
  • Advanced Beginner
  • Competent

Voc4cat: Vocabulary guidelines for NFDI4Cat
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Voc4cat: Vocabulary guidelines for NFDI4CatThe Voc4Cat guidelines have been developed as a blueprint towards suggesting, adding, and editing content to the vocabularies developed throughout NFDI4Cat. The aim of Voc4Cat is to provide guidelines to guarantee consistency and coherence on selection of concepts and terms between all catalysis-related vocabularies in NFDI4Cat. Voc4Cat, initially inspired by the AGROVOC editorial guidelines of FAO, evolved over the course of Task Area 1 (TA1): Ontology Development and Metadata Standards of NFDI4Cat
Learning Resource Type
Best Practices, Cookbook
File Format
PDF
Languages
English
Media Type
Image, Text
Publication Date
2023-03-14
License
CCBY
Size
8.9 MB
Authors
Keywords
#NFDI4Cat#vocabulary#guideline
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Ontologies4Chem: the landscape of ontologies in chemistry
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Ontologies4Chem: the landscape of ontologies in chemistryFor a long time, databases such as CAS, Reaxys, PubChem or ChemSpider mostly rely on unique numerical identifiers or chemical structure identifiers like InChI, SMILES or others to link data across heterogeneous data sources. The retrospective processing of information and fragmented data from text publications to maintain these databases is a cumbersome process. Ontologies are a holistic approach to semantically describe data, information and knowledge of a domain. They provide terms, relations and logic to semantically annotate and link data building knowledge graphs. The application of standard taxonomies and vocabularies from the very beginning of data generation and along research workflows in electronic lab notebooks (ELNs), software tools, and their final publication in data repositories create FAIR data straightforwardly. Thus a proper semantic description of an investigation and the why, how, where, when, and by whom data was produced in conjunction with the description and representation of research data is a natural outcome in contrast to the retrospective processing of research publications as we know it. In this work we provide an overview of ontologies in chemistry suitable to represent concepts of research and research data. These ontologies are evaluated against several criteria derived from the FAIR data principles and their possible application in the digitisation of research data management workflows.
Learning Resource Type
Article
File Format
PDF
Languages
English
Media Type
Text
Publication Date
2022-03-24
License
CCBYNCND
Size
1.1 MB
Authors
Keywords
#terminology#research data#ontology#FAIR data#Cheminformatics#linked data
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NFDI4C* Workshop on synergy & cooperation
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NFDI4C* Workshop on synergy & cooperationA short presentationthat was held in the breakout session "ontologies & metadata" of the NFDI4Chem & NFDI4Cat joint workshop.
File Format
PDF
Languages
English
Media Type
Presentation
Publication Date
2023-05-05
License
CCBY
Size
4.8 MB
Authors
Keywords
#FAIR data#RDM#Metadaten#metadata#Forschungsdatenmanagement#research data management#repository#FAIR-Prinzipien#ELN#FDM#FAIR principles#FAIRe Daten#Infrastruktur#electronic lab notebook#Chemie#ELB#Elektronisches Laborbuch#Forschungsdateninfrastruktur#HeFDI Data Talk#Repositorium#chemistry#infrastructure#research data infrastructure
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NFDI4Chem Terminology Service: Enabling semantic research data interoperability, discovery and exploitation in chemistry
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NFDI4Chem Terminology Service: Enabling semantic research data interoperability, discovery and exploitation in chemistryNFDI4Chem is an initiative to build an open and FAIR infrastructure for research data management in chemistry. The TS is a central part of the NFDI4Chem infrastructure that is currently in the making and which serves as the single point of access for NFDI4Chem services that use terminologies, controlled vocabularies or ontologies.
File Format
PPTX
Languages
English
Media Type
Presentation
Publication Date
2022-02-08
License
CCBY
Size
5.8 MB
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Keywords
No keywords
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Flyer Ontologies4Cat
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Flyer Ontologies4CatFlyer introducing concepts and importance for ontologies in catalysis research as seen at the 56. Jahrestreffen Deutscher Katalytiker in Weimar 2023.
Learning Resource Type
Other
File Format
PDF
Languages
English
Media Type
Image, Text
Publication Date
2023-03-14
License
CCBY
Size
8.8 MB
Authors
Keywords
#NFDI4Cat#ontology#Catalysis research#flyer
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Register of Thesauri, Ontologies and Classification
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Register of Thesauri, Ontologies and ClassificationBARTOC unites information about vocabularies and terminology registries to facilitate use of knowledge organization systems.
Learning Resource Type
Reference Work
File Format
HTML
Languages
English
Media Type
Text
License
PDDL-1.0
Authors
Andreas Blumauer | Ghislain AtemezingGhislain Atemezing | Jakob VoßJakob Voß | Uma BalakrishnanUma Balakrishnan | Stefan PetersStefan Peters | Haralabos PapatheodorouHaralabos Papatheodorou | Biswanath DuttaBiswanath Dutta | Claudio GnoliClaudio Gnoli | Kristin KolshusKristin Kolshus | Gerard CoenGerard Coen | Dan Michael O. HeggøDan Michael O. Heggø | Ziyoung ParkZiyoung Park | So Young YoonSo Young Yoon | Amadeu PonsAmadeu Pons | Andreas LedlAndreas Ledl | Mihai PaunescuMihai Paunescu | Heather HeddenHeather Hedden | Jeannine BeekenJeannine Beeken | Anja GerberAnja Gerber | Anne SchuchardtAnne Schuchardt | Christian RüterChristian Rüter | David-Benjamin RohrerDavid-Benjamin Rohrer | Erik StubkjaerErik Stubkjaer | Jarmo SaarikkoJarmo Saarikko | Monty BittoMonty Bitto | Ralph HafnerRalph Hafner | Sabrina GaabSabrina Gaab | Susanne ArndtSusanne Arndt | Volkan ÇağdaşVolkan Çağdaş | Andreas Blumauer | Ghislain AtemezingGhislain Atemezing | Jakob VoßJakob Voß | Uma BalakrishnanUma Balakrishnan | Stefan PetersStefan Peters | Haralabos PapatheodorouHaralabos Papatheodorou | Biswanath DuttaBiswanath Dutta | Claudio GnoliClaudio Gnoli | Kristin KolshusKristin Kolshus | Gerard CoenGerard Coen | Dan Michael O. HeggøDan Michael O. Heggø | Ziyoung ParkZiyoung Park | So Young YoonSo Young Yoon | Amadeu PonsAmadeu Pons | Andreas LedlAndreas Ledl | Mihai PaunescuMihai Paunescu | Heather HeddenHeather Hedden | Jeannine BeekenJeannine Beeken | Anja GerberAnja Gerber | Anne SchuchardtAnne Schuchardt | Christian RüterChristian Rüter | David-Benjamin RohrerDavid-Benjamin Rohrer | Erik StubkjaerErik Stubkjaer | Jarmo SaarikkoJarmo Saarikko | Monty BittoMonty Bitto | Ralph HafnerRalph Hafner | Sabrina GaabSabrina Gaab | Susanne ArndtSusanne Arndt | Volkan ÇağdaşVolkan Çağdaş
Keywords
#terminology
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